main_script = "epistasis.py"
#output_script = "epistasisoutput.py"

#data_file = "Epicalc/M101expt.dat"
data_file = "Epicalc/M101comp061010W.dat"
print("IN CONFIG")

p_files = ["epicalcP.py"]

program_files = ["Epicalc/epistasis.py","Epicalc/epicalcP.py"]

monitor_polling_frequency = 5
gene_first_index = 66#66, 061010
gene_last_index = 68#291, 061010

trait_first_index = 26 #22, 061010
trait_last_index = 27#41, 061010

default_job_size = 1

default_gene_list = range(gene_first_index,gene_last_index+1,1)#["rhnf4a2", "rhnf4a1", "rkir62"]
default_trait_list = range(trait_first_index,trait_last_index+1,1)#["Heigth","Alder","Omliv"] # height is misspelled purposely

default_selection_variable_index = 9

default_variable_values = ["1","2","3","4","5","6","7","8","9","10","11","12","13","14"]#,"15"]#original
#default_variable_values = ["14"]#,"12","13","14"]#,"15"]#class variables can be selected

default_significance_level = 0.05
Epistasis_working_dir = "Epistasis_tmp/"

output_dir = "epifiles/"
# MiG specifications
resource_specs = {}
#resource_specs["ARCHITECTURE"] ="AMD64"
resource_specs["RUNTIMEENVIRONMENT"] = "GNU_R"
resource_specs["VGRID"] = "DCSC"
resource_specs["CPUTIME"] = 120000
resource_specs["MEMORY"] = 2000
resource_specs["DISK"] = 1

default_user_output_dir = "epifiles/"
#in use?:see R-main script
selection_variable_range = {'316':[1,2], '10':range(1,14)}

resultsdir_prefix_name = "EpistasisFiles"
tmp_local_job_dir = "EpiMigJobFiles"
main_results_dir = "epifiles/"

logfile_name = "logfile.txt"
summary_name = "SummaryJoint.txt"
